Biosecurity science and invasive species ecology
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This dataset contains Unmanned Aircraft System (UAS) multispectral, pansharpened and long-wave infrared (LWIR) orthomosaics of the Samford Ecological Research Facility (SERF), Queensland University of Technology. SERF is located in the Samford Valley, west of Brisbane, Australia and is the usual place for flight testing and evaluation of new equipment. The QUT's Research Engineering Facility team operated DJI Matrice 300RTK (M300) with latest MicaSense Altum-PT (5-band multispectral sensor, LWIR, panchromatic channels and downlight sensor). The images were geo-referenced using the onboard GNSS in M300 and the D-RTK 2 base station and also georectified with 5 ground control points collected by Emlid Reach RS GNSS receivers. In the processing workflow in Agisoft Metashape, the multispectral orthomosaics were orthorectified and pan-sharpened. Dense point clouds were used to generate multispectral (GSD 3.4 cm/px), panchromatic and multispectral pansharpened (GSD 1.6 cm/pixel) and LWIR (GSD 21 cm/pixel) orthomosaics.
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This dataset lists plant species vouchered for identification from Rangeland sites across Australia by the TERN Surveillance Monitoring team, using standardised AusPlots methodologies. <br /> Plant specimens are methodologically collected at each site as part of the AusPlots Vegetation vouchering method. Recorded information includes the site, date of collection and a voucher barcode. The specimen data is updated with the identification date and authority details when species identification is confirmed by the Herbaria. <br /> Plant population and community, soil, basal area and structural information are also assessed at each site. See AusPlots Vegetation vouchering and Rangelands Vocabularies for a list of parameters collected. </br>
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This dataset contains a series of spatial outputs describing probabilistic species predictive occupancy (Species Occupancy Models, or SOM) & habitat suitability (Maximum Entropy, or Maxent) surfaces, the underlying data used to calculate these models & model projections predicting the impact of climate change on flora Maxent surfaces. <br> Model outputs are combination outputs dependent on known species occurrence in the landscape, the species relationship with environmental variables (covariates) such as temperature, rainfall and topography; and its predicted occurrence based on covariate analysis. Maxent models do not predict actual occupancy, but rather habitat suitability, while SOMs predict actual occupancy. confounding factors such as inter-species competition, geographical barriers and disturbance events play a significant role in species occurrence, and are not considered in Maxent or SOM. Flora Maxent climate change projections used NSW and Australian Regional Climate Modelling (NARCliM) variables to predict habitat suitability for a baseline year 2000 and projections for 2030 and 2070. <br> Covariates, Fauna & Flora survey records used to create the models are included. <br> More detailed information regarding each model, its processes and outputs are included in the dataset. <br> A web mapping application on the NSW Spatial Collaboration Portal depicts Maxent & SOM of a selected group of vulnerable Flora & Fauna from this dataset. Access the webapp through the link below: <br> https://portal.spatial.nsw.gov.au/portal/home/item.html?id=78e6ae3d34aa45d2b8118fd0308d6459
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We selected nine study sites, each incorporating three vegetation states: (a) fallow cropland, representing the restoration starting point, (b) planted old field (actively restored site), and (c) reference York gum (E. loxophleba) woodland. Plant species richness and cover All annual and perennial plant species were recorded in spring 2017 within each plot and identified to genus and species level where possible. Nomenclatures follow the Western Australian Herbarium (2017). A point intercept method previously demonstrated to provide objective and repeatable measures of cover (Godínez-Alvarez, Herrick, Mattocks, Toledo & Van Zee 2009; Prober, Standish & Wiehl 2011) was used to quantify cover of individual plant species, total vegetation cover and substrate types (i.e., bare ground, litter cover, plant cover). Ground cover, individual species, and canopy cover intercepting at every 2 m along four parallel, evenly spaced 50 m transects across each plot were recorded using a vertically placed dowel (8 mm wide, 2 m tall), resulting in 100 intercepting points per plot. For planted old fields, transects were placed parallel to planting rows, with two centred on rows and two centred between rows. This approximately represented the relative abundance of planted rows and non-planted inter-rows. If a species was recorded in the plot but did not intercept the dowel on any transect it was assigned 0.5 points. This method provided a measure of relative abundance (percentage cover) of plant species across the plot. To calculate species richness and cover across different life history and growth forms, species were classified into the following groups: total, native trees, native shrubs, native non – planted shrubs, native grasses, native perennial forbs, native annual forbs, exotic grasses and exotic annual forbs using the Western Australian Herbarium (2017) classification. Woody debris and leaf litter surveys Leaf-litter dry mass was estimated by collecting leaf-litter from five randomly placed 25 cm x 25 cm quadrats along two 50 m transects across each plot. Litter was stored in paper bags for transportation and then oven dried for 36 hours at 60 °C. The dried litter was weighed to 3 decimal points. Cover of fine and coarse woody debris and litter depth was estimated at every meter along two 20 m transects for each plot. Woody debris was classified by diameter. Length, max and min diameter was measured for all logs with a diameter greater than 10 cm.
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The dataset can be reused for contintental-wide synthesis of the cover of Australian grasses. It consists of high quality, well-described plot-based data extracted from TERN repository on 13/3/2014. The data includes vegetation records for the Poaceae family from the following dataset: ABARES Ground Cover Reference Sites Database, Biological Survey of South Australia - Vegetation Survey, Biological Database of South Australia, Corveg (Queensland), TERN AusPlots Rangelands Survey Program, Biological Survey of the Ravensthorpe Range (Western Australia).The entire content of the portal was initially extracted using the portal's download feature to obtain the full extent of available data for the following all datasets. These data were loaded into a PostgreSQL database. Subsequently, a SQL query was built for each of the cited datasets which produced a flat table containing information about the survey name, site identifier, visit date, coordinates, species, abundance, biomass and/or cover class, filtering on species of the Poaceae family using a genus list obtained from the website of the Atlas of Living Australia (http://www.ala.org.au/).
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The dataset contains distribution data for the Yellow Crazy Ant (<i>Anoplolepis gracilipes</i>) and scale insects (eg <i>Parasaissetia nigra</i>, ,i>Dysmicoccus finitimus</i>), collected during the Waypoint Survey component of the Pulu Keeling National Park Island-wide Survey (IWS). The aim of the Waypoint Survey is to monitor densities of the invasive Yellow Crazy Ant (<i>Anoplolepis gracilipes</i>) and to detect establishment of any new scale insect species. The other components of the IWS (Transit Survey and Ink Card and Nocturnal Survey) are recorded in separate submissions.
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The island weeds database contains weed records for 697 islands and 1995 plant species. Data sources cited span between 1913 and 2014. To compound the value of the database, original species identifications were verified by Parks and Wildlife botanists and species names were updated to current taxonomy using the WA census data housed within MAX Version 3.0 (Woodman and Gioia 2016). We do not present any interpretation of the data with this data submission. GPS coordinates for weeds were largely unavailable, so most coordinates provided within the database are island centroids. Woodman, S. & Gioia, P. (2016) Max Version 3. Department of Parks and Wildlife, Perth. Available from: http://www.dpaw.wa.gov.au/max.
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The dataset contains passive activity index data used to monitor the distribution and activity of introduced carnivores in the habitat of endangered species within Uluru-Kata Tjuta National Park.
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Predation by feral cats <i>Felis sylvestris catus</i> is currently one hypothesized cause for the recent dramatic small mammal declines across northern Australia. We conducted a field experiment to measure the effect of predation by for this areas typically low-density cat populations on the demography of a native small mammal which due to the now natural scarce abundance of small mammals in the wild had to be reintroduced. We established two 12.5-ha enclosures in tropical savanna woodland on Wongalara Sanctuary, south of Arnhem Land in the Northern Territory. Each enclosure was divided in half, with cats allowed access to one half but not the other. We introduced about 20 individuals of <i>Rattus villosissimus</i>, a native rodent, into each of the four compartments (two enclosures x two predator-access treatments) and monitored rat demography by mark-recapture analysis and radio-tracking, and predator incursions by camera surveillance and track and scat searches. The data can be used for the mark-recapture analysis. The radio-tracking data and predator incursions data will be uploaded separately. The Cat and Dingoes camera trap dataset was produced using a heat-in-motion cameras (Reconyx PC800 Hyperfire, Holmen, Wisconsin, USA) around the outside of the perimeter fences to detect predators. At least four (but up to six and always the same number of cameras at a time) cameras were placed as one camera installed at each side on the outside of the fences of each enclosure. Cameras were un-baited, to avoid attracting predators. This one file dataset contains the information on the presence/absence data of cats and dingoes on each day. 'Site' indicates the enclosure the camera was attached to ('Enclosure_I' or Enclosure_II'), 'Camera number' indicates which site the camera was on. Note that between October 2011 and April 2012, Enclosure II had two additional cameras (one facing the front gate and one additional monitoring the lower half of the back fence of the enclosure) which resulted in a total of six cameras for during that time. 'Date' indicates the date the photo(s) was/were taken, 'Photos_recorded' whether the camera was operational or photos were retained (e.g. one SD-cards was lost). And columns 'Dingo' and 'Cat' indicate whether these animals were present that day or not (na = no photos recorded, 0 = not present that day, 1 = present that day).
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In 2013 the scope of the Island-wide Survey was expanded to gather data at each survey site about scale insect assemblages. This involves a vegetation survey of twelve key tree species that play a role in YCA-scale insect mutualism. These tree species are an effective proxy for the scale species present in an area. The dataset contains vegetation transect survey data on the target twelve key tree species that play a role in YCA-scale insect mutualism, collected during the Island-wide Survey.