We present a High-throughput eDNA dataset of fungi to track functional recovery in ecological restoration in the form of an OTU raw data matrix. We generated a total of 4,993,144 ITS fungal raw reads (118,884 ± 42,210 SD per replicate) across the 42 replicates. A total of 4,955,680 fungal sequences (117,430 ± 42,164 SD per replicate) remained for further analysis after quality filtering. The OTU data provide information on fungal flux at this restoration site through a stagger of years and can be used accordingly.

We generated a total of 2,313,977 16S archaeal raw reads across the 36 replicates (64,277 ± 23,335 SD per replicate). A total of 2,299,955 archaeal sequences (63,888 ± 23,473 SD per replicate) and 1,937 archaeal OTUs (54 ± 20 SD per replicate) remained for further analysis after quality filtering. The OTU data provide information on archaeal flux at an active restoration site at Mt Bold, a water catchment reserve of the Mt Lofty Ranges in South Australia, through a stagger of years and can be used accordingly.

The authors analyzed a total of 3,002,411 quality-filtered bacterial 16S rRNA gene sequences in the 48 technical replicates across 8 revegetation chronosequence sites, consisting of 3,316 OTUs. Nine bacterial phyla dominated this dataset, including Acidobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Firmicutes, Gemmatimonadetes, Planctomycetes, Proteobacteria and Verrucomicrobia.The OTU data provide information on bacterial flux at this restoration site through a stagger of years and can be used accordingly.

The dataset provides information on soil chemistry from a 10 year chronosequence sample of restoration in southern Australia. The parameters include: A) Physical properties- Soil moisture (%), Gravel (%) - ( >2.0 mm), Soil Texture, i.e.Course Sand (%) (200-2000 µm), Fine Sand (%) - (20-200 µm), Sand (%), Silt (%) (2-20 µm), Clay (%) (<2 µm), and B) Chemical properties- such as, Ammonium Nitrogen (mg/Kg), Nitrate Nitrogen (mg/Kg), Phosphorus Colwell (mg/Kg), Potassium Colwell (mg/Kg), Sulphur (mg/Kg), Organic Carbon (%), Conductivity (dS/m), pH (CaCl2), pH (H2O), DTPA Copper (mg/Kg), DTPA Iron (mg/Kg), DTPA Manganese (mg/Kg), DTPA Zinc (mg/Kg), Exc. Aluminium (meq/100g), Exc. Calcium (meq/100g), Exc. Magnesium (meq/100g), Exc. Potassium (meq/100g), Exc. Sodium (meq/100g) and Boron Hot CaCl2 (mg/Kg). This data would have application for land managers. The soil chemistry data is also related to the eDNA OTU table published on "https://doi.org/10.4227/05/5878480a91885", titled "Revegetation rewilds the soil bacterial microbiome of an old field. Part 1: OTU raw data matrix", and as such it would have an appeal to researchers undertaking a meta-analysis on eDNA and restoration outcomes.