BIODIVERSITY FUNCTIONS
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The record contains information on the moth assemblages at canopy and ground level at five sites within a 25 ha plot, at Robson Creek Site, Far North Queensland. Data on moth taxonomic information and the number of individuals sampled from the ground and canopy are provided for the sampling years, 2009, 2010 and 2011.
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This is a collated plant survey data from the Fleurieu Peninsula wetlands (version.2). There is a biological and a spatial component to the dataset. [1] Biological data: This was collated from several sources, collected over the period 2000-2009 and used in the analyses for the paper <i>Diversity patterns of seasonal wetland plant communities mainly driven by rare terrestrial species</i> (Deane et al - Biodiversity and Conservation, DOI: <em>10.1007/s10531-016-1139-1</em>). Biological data were pre-processed to remove sampling bias (the method is described in the paper). Data are presence-absence of 215 native plant species (i.e., exotic species removed) from 76 seasonal wetlands (size range 0.5 - 35 ha) located on the Fleurieu Peninsula, South Australia (centred on latitude 35.5 °S). [2] Spatial data: For each of the 76 wetlands a small amount of spatial data is also provided. Area, centroids, elevation and catchment. The data could be of interest for any typical community data analysis (e.g. beta diversity, similarity, assembly), provided only native wetland plant species were of interest. Data were used to model extinction risk, species-area relationships, occupancy distributions and so on.
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There are presence absence records for vegetation and matched hydrological data from 687 1 x 1 m quadrats recorded from 11 wetlands and wetland complexes (28 sampled hydrological gradients (referred to as transects) across the upper and lower southeast of South Australia. Plant data were collected in spring 2013. Hydrological monitoring data at each site consisted of continuous (6 hourly) surface water level data from a state agency monitoring network. Observed water levels at the monitoring instrument on the day of monitoring were related to the observed depth of water at each quadrat, assuming a flat, level water surface and obtain a datum for each quadrat relative to the monitoring instrument. The continuous monitoring record was then used to calculate a range of different hydrological predictors indicating the variation at each quadrat. The hydrological dataset provided are the univariate summary statistics recording different aspects of surface water dynamics for each quadrat. Hydrological predictors (sum-exceedance value, hydroperiod and maximum inundation depth) were calculated for annual and seasonal periods in the three-years prior to plant data collection. See metadata and relevant publication for additional details on calculation. Hydrological predictors for each quadrat are provided in a single matrix of sites by predictors, with relevant location details for the quadrat (xy coordinates, site, transect). Included is a single electrical conductivity class for each transect (ordinal variable - low moderate, high - see metadata). Vegetation data are provided as a single matrix (quadrats x plant functional group) showing presence absence of each functional group in each quadrat. There is also a lookup table giving the assignment of each plant species to a plant functional group.
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The dataset comprises of a biological and a spatial component. Biological data: This was collated from several sources, collected over the period 2000-2009. Data are lists of presence-absence of 215 native plant species (i.e., exotic species removed) from 76 seasonal wetlands (size range 0.5 - 35 ha) located on the Fleurieu Peninsula, South Australia (centred on latitude 35.5 °S). After data were collated into a single dataset, sampling bias was removed to create a dataset of near-complete census wetlands. Spatial data: For each of the 76 wetlands a small amount of spatial data is also provided, i.e., area, centroids, catchment etc. The dataset could be of interest for any typical community data analysis (e.g. beta diversity, similarity, assembly)- provided only native wetland plant species are of interest. Data presented here were used to model extinction risk, species-area relationships, occupancy distributions and so on.
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We present a High-throughput eDNA dataset of fungi to track functional recovery in ecological restoration in the form of an OTU raw data matrix. We generated a total of 4,993,144 ITS fungal raw reads (118,884 ± 42,210 SD per replicate) across the 42 replicates. A total of 4,955,680 fungal sequences (117,430 ± 42,164 SD per replicate) remained for further analysis after quality filtering. The OTU data provide information on fungal flux at this restoration site through a stagger of years and can be used accordingly.
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We generated a total of 2,313,977 16S archaeal raw reads across the 36 replicates (64,277 ± 23,335 SD per replicate). A total of 2,299,955 archaeal sequences (63,888 ± 23,473 SD per replicate) and 1,937 archaeal OTUs (54 ± 20 SD per replicate) remained for further analysis after quality filtering. The OTU data provide information on archaeal flux at an active restoration site at Mt Bold, a water catchment reserve of the Mt Lofty Ranges in South Australia, through a stagger of years and can be used accordingly.
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This dataset contains the effect of stress and herbivory on the establishment of alternate provenances of a foundation tree species. This data relates to plant fitness and could be used for more broader studies in this area. We established a common garden experiment within a 238 ha restoration site owned and managed by the South Australian Water Corporation (SA Water), near the township of Clarendon (-35.0882°S, 138.6236°E). We grew ca.1500 seedlings sourced from one local and two non-local provenances of <i>Eucalyptus leucoxylon</i> to test whether local provenancing was appropriate. The three provenances spanned an aridity gradient, with the local provenance sourced from the most mesic area and the distant provenance sourced from the most arid. We explored the effect of provenance on four fitness proxies after 15 months, including survival, above-ground height, susceptibility to insect herbivory, and pathogen related stress.
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This data set is a compilation of individual tree and shrub above-ground biomass (dry weight), stem diameter, height, and associated auxiliary information about the sites from which the trees or shrubs were sampled. The data were derived from numerous different projects over the last 5 decades. However, the project under which support was given to collate these datasets was Australia's Department of the Environments Methodology Development Program's Complex Wood System Project (MDP-CWS). The objective of the MDP-CWS project was to develop tools and information to underpin increased land manager participation in the domestic carbon market; the Emissions Reduction Fund (ERF). However, the intention is that this database will be expanded over time and have much greater use than just supporting carbon accounting methodologies. See publication for details: "Keryn I. Paul, John Larmour, Alison Specht, Ayalsew Zerihun, Peter Ritson, Stephen H. Roxburgh, Stan Sochacki, Tom Lewis, Craig V.M. Barton, Jacqueline R. England, Michael Battaglia, Anthony O'Grady, Elizabeth Pinkard, Grahame Applegate, Justin Jonson, Kim Brooksbank, Rob Sudmeyer, Dan Wildy, Kelvin D. Montagu, Matt Bradford, Don Butler, Trevor Hobbs, Testing the generality of below-ground biomass allometry across plant functional types, Forest Ecology and Management. 432: 102-114. https://doi.org/10.1016/j.foreco.2018.08.043. Paul, K.I., Larmour, J., Specht, A., Zerihun, A., Ritson, P., Roxburgh, S.H., Sochacki, S., Lewis, T., Barton, C.V.M., England, J.R., Battaglia, M., O’Grady, A., Pinkard, E., Applegate, G., Jonson, J., Brooksbank, K., Sudmeyer, R., Wildy, D., Montagu, K.D., Bradford, M., Butler, D., Hobbs, T., 2019. Testing the generality of below-ground biomass allometry across plant functional types. Forest Ecology and Management 432, 102–114. https://doi.org/10.1016/j.foreco.2018.08.043
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The dataset contains biological data collected 2005, 2012 as part of the Tanami Regional Biodiversity Monitoring (Tanami RBM) program. The Tanami RBM program uses 89 sites across the Tanami region, central-west Northern Territory. At these sites, flora and fauna are surveyed during the late-dry (usually November-December) or late-wet (usually February-March) seasons. Each site comprises a 200 m x 300 m survey plot from which the data are recorded using various survey methods: site descriptions, vegetation transects, bird surveys, small vertebrate trapping, and tracking surveys. This dataset contains the data from eight surveys undertaken between 2005 and 2012: six in the late-dry and two in the late-wet seasons. The precision of site locations has been reduced to 0.1 decimal degree, which is approximately 10 km at the study region. This denaturing is because some sites contain threatened and/or sensitive species that might be at risk from collection or disturbance. The dataset contains species information from vegetation surveys and fauna species captures and observations. The data can be used to: [1] Review the outcomes of the survey methodologies [2] Presence data of the species recorded [3] Impacts of mining on the region's flora and fauna e.g. what is the spatial and temporal impact of mining activities on biota? [4] Conservation and biodiversity e.g. what are the spatial and temporal trends in the occurrence of key/threatened species? How do land units/systems change over time?
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River sites were sampled during the summers of 2008/09 and 2009/10 in a survey designed to identify correlations between commonly used river condition variables and grazing land-use. Potential stream sites in northern Tasmania were screened by catchment size, northing and slope, and according to attributes aimed at minimising confounding variables, maintaining broad consistency in landscape and geomorphological context, and promoting independence among sites. A set of 27 survey sites was selected across a gradient from low to high proportion of land under grazing in their upstream catchments. Catchment sizes varied from 20-120 km2 and proportion grazing from 0-80%. Macroinvertebrates were sampled using Surber sampler. All macroinvertebrates within a 20% sub-sample identified to family and counted, with individuals from the insect orders Ephemeroptera, Plecoptera and Trichoptera identified to genus/species (by Laurie Cook, UTAS). Algal abundance was estimated at each site as the proportion of algal cover and as areal density of benthic chlorophyll a. Physical data variables collected were: water temperature, conductivity, turbidity, pH, total alkalinity, nitrate+nitrate, dissolved reactive phosphorus, total nitrogen, total phosphorus, overhead shading, the proportion of fine sediments within the sampled riffle zone, accumulated abstraction index and accumulated regulation index. For more information see: See Magierowski RH, Read SM, Carter SJB, Warfe DM, Cook LS, Lefroy EC and Davies PE. Inferring landscape-scale land-use impacts on rivers using data from mesocosm experiments and artificial neural networks. PLOS ONE.