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A dataset on spatial distribution and association patterns of three species from moist semi deciduous forest
Knowledge on the spatial distribution and inter-specific association patterns in tree species is essential in plant ecology to understand ecological mechanisms and dynamic process operating in spatial distribution of a tree population in a plant community. We measured and compiled datasets on three tropical tree species from a moist semi deciduous forest. We used the software Programita to perform univariate and bivariate point pattern analysis by Ripley's L-function. These datasets can be used to inform on possibilities of interaction of these species in forest stands. These datasets can be also used to access the capacity of each tree of <i>Mansonia altissima</i> var. <i>altissima</i> A. Chev. to develop and grow or its exclusion probability within a plant community. <i>Mansonia altissima</i> A. Chev. is a plant species represented by only one-population in a moist semi-deciduous forest in Republic of Benin. Our project aims to understand its ecology for restoration and conservation purposes within its natural habitat as well as other habitats inside of its distribution range.
Data were used to demonstrate fitness impacts caused by fragmentation context. Showed extensive pollination can protect tree fitness from fragmentation. Grew open-pollinated progeny arrays of the bird-pollinated, mallee tree <i>Eucalyptus incrassata</i> in a randomised block design in a common garden experiment at Monarto, South Australia. Progeny arrays were collected from parental trees in either continuous forest or highly fragmented contexts. Data are therefore experimental, for hypothesis testing Data are not descriptive ecological, not plot based and not time-series. Data are not a representative sample of <i>Eucalyptus incrassata</i> and not representative of mallee eucalypts.
The authors analyzed a total of 3,002,411 quality-filtered bacterial 16S rRNA gene sequences in the 48 technical replicates across 8 revegetation chronosequence sites, consisting of 3,316 OTUs. Nine bacterial phyla dominated this dataset, including Acidobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Firmicutes, Gemmatimonadetes, Planctomycetes, Proteobacteria and Verrucomicrobia.The OTU data provide information on bacterial flux at this restoration site through a stagger of years and can be used accordingly.
High-throughput eDNA monitoring of fungi to track functional recovery in ecological restoration: OTU raw data matrix
We present a High-throughput eDNA dataset of fungi to track functional recovery in ecological restoration in the form of an OTU raw data matrix. We generated a total of 4,993,144 ITS fungal raw reads (118,884 ± 42,210 SD per replicate) across the 42 replicates. A total of 4,955,680 fungal sequences (117,430 ± 42,164 SD per replicate) remained for further analysis after quality filtering. The OTU data provide information on fungal flux at this restoration site through a stagger of years and can be used accordingly.
We generated a total of 2,313,977 16S archaeal raw reads across the 36 replicates (64,277 ± 23,335 SD per replicate). A total of 2,299,955 archaeal sequences (63,888 ± 23,473 SD per replicate) and 1,937 archaeal OTUs (54 ± 20 SD per replicate) remained for further analysis after quality filtering. The OTU data provide information on archaeal flux at an active restoration site at Mt Bold, a water catchment reserve of the Mt Lofty Ranges in South Australia, through a stagger of years and can be used accordingly.
The dataset contains biological data collected 2005, 2012 as part of the Tanami Regional Biodiversity Monitoring (Tanami RBM) program. The Tanami RBM program uses 89 sites across the Tanami region, central-west Northern Territory. At these sites, flora and fauna are surveyed during the late-dry (usually November-December) or late-wet (usually February-March) seasons. Each site comprises a 200 m x 300 m survey plot from which the data are recorded using various survey methods: site descriptions, vegetation transects, bird surveys, small vertebrate trapping, and tracking surveys. This dataset contains the data from eight surveys undertaken between 2005 and 2012: six in the late-dry and two in the late-wet seasons. The precision of site locations has been reduced to 0.1 decimal degree, which is approximately 10 km at the study region. This denaturing is because some sites contain threatened and/or sensitive species that might be at risk from collection or disturbance. The dataset contains species information from vegetation surveys and fauna species captures and observations. The data can be used to:  Review the outcomes of the survey methodologies  Presence data of the species recorded  Impacts of mining on the region's flora and fauna e.g. what is the spatial and temporal impact of mining activities on biota?  Conservation and biodiversity e.g. what are the spatial and temporal trends in the occurrence of key/threatened species? How do land units/systems change over time?
The dataset provides information on soil chemistry from a 10 year chronosequence sample of restoration in southern Australia. The parameters include: A) Physical properties- Soil moisture (%), Gravel (%) - ( >2.0 mm), Soil Texture, i.e.Course Sand (%) (200-2000 µm), Fine Sand (%) - (20-200 µm), Sand (%), Silt (%) (2-20 µm), Clay (%) (<2 µm), and B) Chemical properties- such as, Ammonium Nitrogen (mg/Kg), Nitrate Nitrogen (mg/Kg), Phosphorus Colwell (mg/Kg), Potassium Colwell (mg/Kg), Sulphur (mg/Kg), Organic Carbon (%), Conductivity (dS/m), pH (CaCl2), pH (H2O), DTPA Copper (mg/Kg), DTPA Iron (mg/Kg), DTPA Manganese (mg/Kg), DTPA Zinc (mg/Kg), Exc. Aluminium (meq/100g), Exc. Calcium (meq/100g), Exc. Magnesium (meq/100g), Exc. Potassium (meq/100g), Exc. Sodium (meq/100g) and Boron Hot CaCl2 (mg/Kg). This data would have application for land managers. The soil chemistry data is also related to the eDNA OTU table published on "https://doi.org/10.4227/05/5878480a91885", titled "Revegetation rewilds the soil bacterial microbiome of an old field. Part 1: OTU raw data matrix", and as such it would have an appeal to researchers undertaking a meta-analysis on eDNA and restoration outcomes.