TERN Geospatial Catalogue
Revegetation rewilds the soil bacterial microbiome of an old field- Part 1: OTU raw data matrix
The authors analyzed a total of 3,002,411 quality-filtered bacterial 16S rRNA gene sequences in the 48 technical replicates across 8 revegetation chronosequence sites, consisting of 3,316 OTUs. Nine bacterial phyla dominated this dataset, including Acidobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Firmicutes, Gemmatimonadetes, Planctomycetes, Proteobacteria and Verrucomicrobia.The OTU data provide information on bacterial flux at this restoration site through a stagger of years and can be used accordingly.
Simple
Identification info
- Date (Creation)
- 2014-12-17
- Date (Publication)
- 2017-01-13
- Date (Revision)
- 2014-07-14
- Edition
- 1.0
Identifier
Publisher
Author
School of Biological Sciences, University of Adelaide - Gellie , Nicholas ()
Molecular Life Sciences Building, The University of Adelaide - North Terrace Campus, Adelaide, SA, 5005, Australia
Adelaide
SA
5005
Australia
Co-author
School of Biological Sciences, University of Adelaide - Mills , Jacob ()
Molecular Life Sciences Building, The University of Adelaide - North Terrace Campus, Adelaide, SA, 5005, Australia
Adelaide
SA
5005
Australia
Co-author
College of Science and Engineering, Flinders University - Breed, Martin (Senior Lecturer in Biology)
Physical Sciences Building, Bedford Park, SA, 5042, Australia
Bedford Park
SA
5042
Australia
Co-author
School of Biological Sciences, University of Adelaide - Lowe, Andy (Professor)
Molecular Life Sciences Building, The University of Adelaide - North Terrace Campus, Adelaide, SA, 5005, Australia
Adelaide
SA
5005
Australia
- Website
- https://www.tern.org.au/
- Purpose
- This project forms part of the authors PhD. The OTU data was generated for a manuscript in Molecular Ecology "Revegetation rewilds the soil bacterial microbiome of an old field" https://doi.org/10.1111/mec.14081 that uses eDNA assessment to provide a significant extension to current restoration monitoring practice.
- Credit
- We at TERN acknowledge the Traditional Owners and Custodians throughout Australia, New Zealand and all nations. We honour their profound connections to land, water, biodiversity and culture and pay our respects to their Elders past, present and emerging.
- Credit
- The authors thank A. Bissett, A. Fitzgerald, A. Young, Z. Baruch, S. Caddy-Retalic, L. Clarke, S. Kennedy, I. Fox, M. Laws, K. McCallum, and J. McDonald for technical and field assistance. We are grateful for technical, field and site access support from the Australian Genome Research Facility, BioPlatforms Australia, SA Water and the Terrestrial Ecosystem Research Network. This work was supported by Australian Research Council funding to AJL and MFB (DE150100542; DP150103414).
- Status
- Completed
Point of contact
School of Biological Sciences, University of Adelaide - Gellie , Nicholas ()
Molecular Life Sciences Building, The University of Adelaide - North Terrace Campus, Adelaide, SA, 5005, Australia
Molecular Life Sciences Building, The University of Adelaide - North Terrace Campus
Adelaide
SA
5005
Australia
- Topic category
-
- Biota
- Environment
Extent
- Description
- The study system was an active restoration site at Mt Bold, a water catchment reserve of the Mt Lofty Ranges in South Australia (35.07;S, 138.42 E). This catchment was dominated by an open eucalypt woodland that has historically been subjected to tree clearance and grazing that began early in the 20th century. In this context, the native understory and most of the overstory was cleared and replaced by a grassland dominated by introduced grasses. At the study site, grazing ceased in 2003 when South Australia's water utility (SA Water) took over management. SA Water has actively restored the study site since 2005, with the restoration goal of recreating the local Eucalyptus leucoxylon dominated grassy woodland community.
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S
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W
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Temporal extent
- Time period
- 2014-12-17 2014-12-18
- Maintenance and update frequency
- Not planned
- GCMD Science Keywords
- ANZSRC Fields of Research
- TERN Parameter Vocabulary
- GCMD Horizontal Resolution Ranges
- GCMD Vertical Resolution Ranges
- GCMD Temporal Resolution Ranges
- Keywords (Discipline)
-
- Biodiversity Inventory
- Ecological Succession
- Experimental Ecology
- Landscape Ecology
- Long-Term Community Monitoring
- Long-Term Species Monitoring
- Molecular Ecology
- Restoration Ecology
- Soil Ecology
- Carbon Dynamics
- Eucalypt Open Woodlands
- Eucalypt Woodlands
- Modified Native Vegetation
- Revegetation
- Microbial Ecology
- Soil microbiome
Resource constraints
- Use limitation
- The Creative Commons Attribution 4.0 International (CC BY 4.0) license allows others to copy, distribute, display, and create derivative works provided that they credit the original source and any other nominated parties. Details are provided at https://creativecommons.org/licenses/by/4.0/
- File name
- 88x31.png
- File description
- CCBy Logo from creativecommons.org
- File type
- png
- Title
- Creative Commons Attribution 4.0 International Licence
- Alternate title
- CC-BY
- Edition
- 4.0
- Access constraints
- License
- Use constraints
- Other restrictions
- Other constraints
- TERN services are provided on an "as-is" and "as available" basis. Users use any TERN services at their discretion and risk. They will be solely responsible for any damage or loss whatsoever that results from such use including use of any data obtained through TERN and any analysis performed using the TERN infrastructure. <br />Web links to and from external, third party websites should not be construed as implying any relationships with and/or endorsement of the external site or its content by TERN. <br /><br />Please advise any work or publications that use this data via the online form at https://www.tern.org.au/research-publications/#reporting
- Other constraints
- Please cite this dataset as {Author} ({PublicationYear}). {Title}. {Version, as appropriate}. Terrestrial Ecosystem Research Network. Dataset. {Identifier}.
- Other constraints
- (C)2017 University of Adelaide. Rights owned by University of Adelaide.
Resource constraints
- Classification
- Unclassified
Distribution Information
Distributor
Distributor
- OnLine resource
- Site_samples
Distribution Information
Distributor
Distributor
- OnLine resource
- Mt_Bold_OTUs
Data quality info
- Hierarchy level
- Dataset
- Title
- Revegetation rewilds the soil bacterial microbiome of an old field.
- Abstract
- Revegetation rewilds the soil bacterial microbiome of an old field.
Resource lineage
- Statement
- EDNA metabarcoding: Three 25 m x 25 m quadrats were randomly selected per site, giving a total of 24 quadrats across the 8 sites. Soil was sampled from the 0-10 cm and 20-30 cm soil horizons at each quadrat. A representative 50 g sample of soil was collected at each of these 24 quadrats by pooling nine soil samples from each soil depth, including soil from open areas and under plants. These nine soil samples were pooled into a sterile plastic bag, and homogenised using a sterilised trowel. All soil samples (n = 48) were frozen on site in sterile 50 mL falcon tubes until DNA extraction- hereafter referred to as technical replicates.
- Hierarchy level
- Dataset
Reference System Information
- Reference system identifier
- EPSG/EPSG:3577
- Reference system type
- Geodetic Geographic 2D
Metadata
- Metadata identifier
- urn:uuid/d8c670e6-7dae-440a-8f82-e89ab0e02808
- Language
- English
- Character encoding
- UTF8
Point of contact
Type of resource
- Resource scope
- Dataset
- Metadata linkage
-
https://geonetwork.tern.org.au/geonetwork/srv/eng/catalog.search#/metadata/d8c670e6-7dae-440a-8f82-e89ab0e02808
Point-of-truth metadata URL
- Date info (Creation)
- 2022-06-26T00:00:00
- Date info (Revision)
- 2023-01-24T04:11:26
Metadata standard
- Title
- ISO 19115-1:2014/AMD 1:2018 Geographic information - Metadata - Fundamentals
- Edition
- 1
Metadata standard
- Title
- ISO/TS 19115-3:2016
- Edition
- 1.0
Metadata standard
- Title
- ISO/TS 19157-2:2016
- Edition
- 1.0
- Title
- Terrestrial Ecosystem Research Network (TERN) Metadata Profile of ISO 19115-3:2016 and ISO 19157-2:2016
- Date (published)
- 2021
- Edition
- 1.0
Identifier
Overviews
Spatial extent
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E
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Provided by
Associated resources
Not available